Bioinformatician with 6+ years of experience in transcriptomic data analysis, NGS, and molecular structure data processing. Proficient in Python, R, and Bash scripting with strong skills in data science techniques including machine learning. Proven success in sRNA annotation and protein modeling across multiple organisms. Published researcher seeking to apply computational expertise in a remote-first environment.
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PhD student
IPICyT
Jan 2021 - Current(5 years 10 months)
Applied k-means clustering to identify organism-specific sRNA expression patterns across interaction timepoints, revealing dynamic regulatory patterns during mutualistic establishment. Conducted Gene Ontology enrichment analysis for differentially accumulated sRNA clusters, identifying biological processes modulated during plant-fungus interactions. Characterized dynamic conformational changes in AGO-sRNA-target complexes by modeling different protein states using multiple templates, identifying key non-conserved contacts in intermediate conformations.
Master student
IPICyT
Jan 2019 - Jan 2021(2 years 1 month)
Implemented an organism-specific RNAseq mapping and loci annotation pipeline, achieving 90% genome mapping rate and identified 354 loci in Arabidopsis and 227 in Trichoderma. Developed a scoring algorithm incorporating thermodynamics and plant sRNA targeting parameters to predict non-canonical sRNA-target interactions for previously uncharacterized tsRNAs ≥24 nt.
Bachelor student
UANL
Jan 2014 - Jan 2019(5 years 1 month)
Identified 80 miRNAs across Ae. aegypti life stages (eggs, females, males) from RNAseq data, using miRDeep2 to annotate microRNAs critical for mosquito development and viral transmission. Performed conservation analysis that revealed 55 miRNAs shared across insect orders, with 62.4% present in Diptera and 34 unique to holometabolous insects, establishing evolutionary relationships. Authored and contributed to 3 peer-reviewed publications as the lead or consulted bioinformatician.
Education
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Associate Data Scientist
Jul 2025
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PhD. degree in Molecular Biology (in progress)
Instituto Potosino de Investigación Científica y Tecnológica A.C. (IPICYT)
Jan 2021 - Current(5 years 10 months)
San Luis Potosí, San Luis Potosí, México
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Sc. M. degree in Molecular Biology
Instituto Potosino de Investigación Científica y Tecnológica A.C. (IPICYT)
Jan 2019 - Jan 2021(2 years 1 month)
San Luis Potosí, San Luis Potosí, México
Bachelor's degree in Genomic Biotechnology
Universidad Autonoma de Nuevo León (UANL)
Jan 2014 - Jan 2019(5 years 1 month)
Monterrey, Nuevo León, México
Publications
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De Novo miRNAs from Anisopteromalus calandrae (Hymenoptera: Pteromalidae) Conserved in the Order Hymenoptera
Jan 2024
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miRNAs of Aedes aegypti (Linnaeus 1762) conserved in six orders of the class Insecta
Jan 2021
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Genomic Mining, Evolution Analysis, and Structural Characterization of the Sepik Virus